Hello Maja. Thanks for getting back. If you backup your smartphone using Samsung Smart Switch and transfer that data to your PC, Windows Defender and MRT do not actively scan or search for malware within that backed up data when transferred to your device. This is because those backup files (app data, media, and system settings) are in proprietary storage formats or compressed archives which, by default, Defender and MRT do not actively inspect, unless the malware is unpacked and running on your PC.
Windows Defender is focused on threats targeting Windows as an operating system and MRT is for use after infection that checks for known commonly used malware based only on the Windows OS, it does not check mobile backups or protect from Android targeted threats. All the malware may need to do is get inside the APK or app data in the backup and you won't get any alerts unless that data is executed or extracted in a way that tricks your device into thinking it is a Windows threat.