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Hi Joe,
The delay when switching pen colors or the pen becoming temporarily unresponsive may indicate that OneNote is struggling to keep up with the rendering workload, synchronization activity, or resource usage while the PDF is displayed.
Please try the following steps to see if it helps:
1/ Disable the problematic add-In
Note: Many users will have no add-ins listed. If you do not see any COM add-ins, skip this fix.
- Launch the OneNote Desktop app.
- Click File and go to Options.
- Click Add-ins.
- At the bottom, open Manage and select COM Add-ins, then click Go.
- Find the add-in you suspect (especially anything installed recently).
- Uncheck it to disable, then click OK.
- Restart OneNote and test again.
2/ Disable pen features
If OneNote freezes mainly while using a pen, ink smoothing and handwriting processing can add constant background load. Turning these off can reduce stalls while drawing.
- Open the OneNote Desktop app.
- Click File > Options.
- Open the Advanced tab in the left sidebar.
- Scroll to the Pen section and uncheck Smooth ink when drawing with a pen (if present).
- Also uncheck Enable automatic handwriting recognition (if present).
- Click OK and restart OneNote.
3/ Reset OneNote cache
Pleae try to confirm your notebooks are synced before doing this. If you have unsynced local edits and you rebuild cache, you risk losing those local-only changes. If OneNote is unstable, open the same notebook on another device and verify your latest edits are visible there.
This cache method is for OneNote Desktop (Microsoft 365/2016). If you are using the Microsoft Store OneNote app, use the Repair steps below
- Press Windows + R to open Run.
- Type the following and press Enter:
%localappdata%\Microsoft\OneNote- Open the folder for your version (for example, open 16.0 for OneNote 2016/Microsoft 365).
- Right-click the cache folder and rename it (for example, cache.old).
- Open OneNote again. It will generate a new cache folder automatically.
The first launch after a cache rebuild can feel slower while OneNote re-downloads content and re-indexes notebooks.
4/ Repair OneNote
Note: Repair is the safer first try. Reset can remove local app data. Cloud notebooks should remain safe, but local-only unsynced changes can be lost if they were never uploaded.
Pick the option that matches your OneNote:
- If you use OneNote for Windows (Microsoft Store app): Use Windows “Repair/Reset” for the app.
- If you use OneNote Desktop (Microsoft 365/Office install): Repair Microsoft 365/Office (OneNote is part of the Office suite for many users).
- Press Windows + I to open Settings.
- Click Apps.
- Search for OneNote (Store app) or Microsoft 365/Microsoft Office (Desktop install).
- Store app path: Click OneNote > Advanced options > under Reset, click Repair first. If it still freezes, you can try Reset (this may clear local app data).
- Desktop (Microsoft 365/Office) path: Click Microsoft 365/Office > Modify (or Change) > run Quick Repair. If the issue persists, run Online Repair (takes longer but is deeper).
For more information, please consult: Repair an Office application | Microsoft Support
If you have any questions or need further assistance, please feel free to share them in the comments on this post.
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